Improved specimen reconstruction by Hilbert phase contrast tomography.
نویسندگان
چکیده
The low signal-to-noise ratio (SNR) in images of unstained specimens recorded with conventional defocus phase contrast makes it difficult to interpret 3D volumes obtained by electron tomography (ET). The high defocus applied for conventional tilt series generates some phase contrast but leads to an incomplete transfer of object information. For tomography of biological weak-phase objects, optimal image contrast and subsequently an optimized SNR are essential for the reconstruction of details such as macromolecular assemblies at molecular resolution. The problem of low contrast can be partially solved by applying a Hilbert phase plate positioned in the back focal plane (BFP) of the objective lens while recording images in Gaussian focus. Images recorded with the Hilbert phase plate provide optimized positive phase contrast at low spatial frequencies, and the contrast transfer in principle extends to the information limit of the microscope. The antisymmetric Hilbert phase contrast (HPC) can be numerically converted into isotropic contrast, which is equivalent to the contrast obtained by a Zernike phase plate. Thus, in-focus HPC provides optimal structure factor information without limiting effects of the transfer function. In this article, we present the first electron tomograms of biological specimens reconstructed from Hilbert phase plate image series. We outline the technical implementation of the phase plate and demonstrate that the technique is routinely applicable for tomography. A comparison between conventional defocus tomograms and in-focus HPC volumes shows an enhanced SNR and an improved specimen visibility for in-focus Hilbert tomography.
منابع مشابه
Theory and algorithms for phase-contrast CT
Applications of x-ray computed tomography (CT) vary from medical and biological imaging to material research and industrial inspection. We briefly discuss the state of the art in conventional absorption-based CT and make a link to a new imaging technique: phase-contrast CT. This technique can be implemented at third generation synchrotron radiation sources or by using a microfocus x-ray tube. U...
متن کاملPhase Contrast Cryo-Electron Tomography and Single Particle Analysis with a New Phase Plate
Biological samples are very sensitive to beam irradiation because of induced changes to their structure by the incident electron. Due to the limited allowed dose, cryo-images of frozen-hydrated biological specimens are typically noisy and low in contrast. One way to improve the imaging of such samples is by using a phase plate to increase contrast and signal-to-noise ratio. The improved contras...
متن کاملZernike phase contrast cryo-electron microscopy and tomography for structure determination at nanometer and subnanometer resolutions.
Zernike phase contrast cryo-electron microscopy (ZPC-cryoEM) is an emerging technique that is capable of producing higher image contrast than conventional cryoEM. By combining this technique with advanced image processing methods, we achieved subnanometer resolution for two biological specimens: 2D bacteriorhodopsin crystal and epsilon15 bacteriophage. For an asymmetric reconstruction of epsilo...
متن کاملA fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM.
Today, the resolution in phase-contrast cryo-electron tomography is for a significant part limited by the contrast transfer function (CTF) of the microscope. The CTF is a function of defocus and thus varies spatially as a result of the tilting of the specimen and the finite specimen thickness. Models that include spatial dependencies have not been adopted in daily practice because of their high...
متن کاملA sparse-projection computed tomography reconstruction method for in vivo application of in-line phase-contrast imaging
BACKGROUND In recent years, X-ray phase-contrast imaging techniques have been extensively studied to visualize weakly absorbing objects. One of the most popular methods for phase-contrast imaging is in-line phase-contrast imaging (ILPCI). Combined with computed tomography (CT), phase-contrast CT can produce 3D volumetric images of samples. To date, the most common reconstruction method for phas...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Journal of structural biology
دوره 164 2 شماره
صفحات -
تاریخ انتشار 2008